PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G060900.1
Common NameB456_009G060900, LOC105765878
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 294aa    MW: 32034.8 Da    PI: 8.3515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G060900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036116138123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Gorai.009G060900.1 116 FSCTYCQRKFYSSQALGGHQNAH 138
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-6113143No hitNo description
PROSITE profilePS5015711.385116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLSTKTFHRL PNNIAERVVD TPPMESLSKK PSASETTSCV LSIPEASNEV IKDGEQEAAK  60
PSLQLDLKLT TSECDDMGGF NKELNLIDSF NTAGSSDSTA PEPETPQATD GEQRVFSCTY  120
CQRKFYSSQA LGGHQNAHKR ERTLVKRGQR MGWGGPQATA LGHPYFYHNH HSSLASLPLH  180
GSYNRSLGIQ VHSMIHKPSS HISSTGFGNA YGHHSWSRPP IDQQPAIGKL SMENHHATGA  240
GPSGRANVGK FSITRMMMGS PADEVTSNYW WSAGASMKPK KEEMQKVDLS LKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5830482e-68JX583048.1 Gossypium hirsutum clone NBRI_GE16000 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440597.10.0PREDICTED: zinc finger protein 3-like
SwissprotQ392627e-50ZFP3_ARATH; Zinc finger protein 3
TrEMBLA0A0D2QA460.0A0A0D2QA46_G
STRINGVIT_04s0008g05930.t012e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-59C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]